Utilities.h

//-*- C++ -*_
//-*- coding: utf-8 -*-
//
// Authors: Bryan Riel, Joshua Cohen
// Copyright 2017-2018
 
#pragma once
 
#include <algorithm>
#include <chrono>
#include <iostream>
#include <iterator>
#include <limits>
#include <sstream>
#include <string>
#include <vector>
#include <valarray>
#include <complex>
 
// Macro wrappers to check vector lengths 
// (adds calling function and variable name information to the exception)
#define checkVecLen(v,l) isce3::core::checkVecLenDebug(v,l,#v,__PRETTY_FUNCTION__)
#define check2dVecLen(v,l,w) isce3::core::check2dVecLenDebug(v,l,w,#v,__PRETTY_FUNCTION__)
 
namespace isce3 { namespace core {

    inline uint64_t getTimeStampMillisec() {
        using namespace std::chrono;
        return duration_cast<milliseconds>(system_clock::now().time_since_epoch()).count();
    }

    inline std::string getTempString(const std::string& suffix) {
        if (suffix.length() == 0) {
            return "tmp_" + std::to_string(getTimeStampMillisec());
        }
        return "tmp_" + suffix + "_" + std::to_string(getTimeStampMillisec());
    }
 

    template <typename T>
    inline void checkVecLenDebug(const std::vector<T> &vec, size_t len, const char *vec_name, 
                                 const char *parent_func) {
        if (vec.size() != len) {
            std::string errstr = "In '" + std::string(parent_func) + "': Vector '" + 
                                 std::string(vec_name) + "' has size " + 
                                 std::to_string(vec.size()) + ", expected size " + 
                                 std::to_string(len) + ".";
            throw std::invalid_argument(errstr);
        }
    }
 
    // Same as above but for 2D vectors
    template <typename T>
    inline void check2dVecLenDebug(const std::vector<std::vector<T>> &vec,
                                   size_t len, size_t width, const char *vec_name,
                                   const char *parent_func) {
        if ((vec.size() != len) && (vec[0].size() != width)) {
            std::string errstr = "In '" + std::string(parent_func) + "': Vector '" + 
                                 std::string(vec_name) + "' has size (" + 
                                 std::to_string(vec.size()) + " x " + 
                                 std::to_string(vec[0].size()) + "), expected size (" + 
                                 std::to_string(len) + " x " + std::to_string(width) + ").";
            throw std::invalid_argument(errstr);
        }
    }

    template <typename T>
    inline std::vector<T> arange(T low, T high, T increment) {
        // Instantiate the vector
        std::vector<T> data;
        // Set the first value
        T current = low;
        // Loop over the increments and add to vector
        while (current < high) {
            data.push_back(current);
            current += increment;
        }
        // done
        return data;
    }

    template <typename T>
    inline std::vector<T> linspace(T low, T high, std::size_t number) {
        // Instantiate the vector
        std::vector<T> data;
        // Compute the increment
        T increment = (high - low) / (number - 1);
        // Handle cases where number in (0, 1)
        if (number == 0) {
            return data;
        }
        if (number == 1) {
            data.push_back(low);
            return data;
        }
        // Loop over the increments and add to vector
        for (std::size_t i = 0; i < number - 1; ++i) {
            data.push_back(low + i * increment);
        }
        // Add the last element
        data.push_back(high);
        // done
        return data;
    }

    template <typename T>
    inline void linspace(T low, T high, std::vector<T> & data) {
        // Compute the increment
        int number = data.size();
        T increment = (high - low) / (number - 1);
        // Handle cases where number in (0, 1)
        if (number == 0) {
            return;
        }
        if (number == 1) {
            data[0] = low;
            return;
        }
        // Loop over the increments and add to vector
        for (std::size_t i = 0; i < number; ++i) {
            data[i] = low + i * increment;
        }
        // done
    }

    template <typename T>
    inline void linspace(T low, T high, std::valarray<T> & data) {
        // Compute the increment
        int number = data.size();
        T increment = (high - low) / (number - 1);
        // Handle cases where number in (0, 1)
        if (number == 0) {
            return;
        }
        if (number == 1) {
            data[0] = low;
            return;
        }
        // Loop over the increments and add to vector
        for (std::size_t i = 0; i < number; ++i) {
            data[i] = low + i * increment;
        }
        // done
    }

    template <typename T>
    inline std::vector<T> logspace(T first, T last, std::size_t number, T base=10) {
        // Instantiate the vector
        std::vector<T> data;
        // Compute the increment of the powers
        T increment = (last - first) / (number - 1);
        // Handle cases where number in (0, 1)
        if (number == 0) {
            return data;
        }
        if (number == 1) {
            data.push_back(pow(base, first));
            return data;
        }
        // Loop over the increments and add to vector
        for (std::size_t i = 0; i < number - 1; ++i) {
            T value = pow(base, first + i * increment);
            data.push_back(value);
        }
        // Add the last element
        data.push_back(pow(base, last));
        // done
        return data;
    }

    template <typename T>
    inline std::vector<T> stringToVector(const std::string & str) {
        // Make a stream
        std::stringstream stream(str);
        // Parse string
        T number;
        std::vector<T> vec;
        while (stream >> number) {
            vec.push_back(number);
        }
        // done
        return vec;
    }

    template <typename T>
    inline std::string vectorToString(const std::vector<T> & vec) {
        // Initialize stream
        std::stringstream stream;
        // Print values
        std::copy(vec.begin(), vec.end(), std::ostream_iterator<T>(stream, " "));
        // done
        return stream.str();
    }

    template <typename T>
    inline bool
    compareFloatingPoint(T first, T second) {
        const T scale = std::max({static_cast<T>(1.0), std::abs(first), std::abs(second)});
        return std::abs(first - second) <= std::numeric_limits<T>::epsilon() * scale;
    }

    template <typename T>
    inline bool
    compareComplex(std::complex<T> first, std::complex<T> second) {
        return compareFloatingPoint(first.real(), second.real())
            && compareFloatingPoint(first.imag(), second.imag());
    }

    template <typename T>
    inline std::valarray<bool>
    makeMask(const std::valarray<std::complex<T>> & v, std::complex<T> noDataValue) {
        std::valarray<bool> mask(v.size());
        for (size_t i = 0; i < v.size(); ++i) {
            if (compareComplex(v[i], noDataValue)) {
                mask[i] = false;
            } else {
                mask[i] = true;
            }
        }
        return mask;
    }

    template <typename T>
    inline std::valarray<bool>
    makeMask(const std::valarray<T> & v, T noDataValue) {
        std::valarray<bool> mask(v.size());
        for (size_t i = 0; i < v.size(); ++i) {
            if (compareFloatingPoint(v[i], noDataValue)) {
                mask[i] = false;
            } else {
                mask[i] = true;
            }
        }
        return mask;
    }

    inline void insertionSort(std::valarray<double> & a,
                              std::valarray<double> & b,
                              std::valarray<double> & c) {
        for (int i = 1; i < a.size(); ++i) {
            int j = i - 1;
            const double tempa = a[i];
            const double tempb = b[i];
            const double tempc = c[i];
            while (j >= 0 && a[j] > tempa) {
                a[j+1] = a[j];
                b[j+1] = b[j];
                c[j+1] = c[j];
                j = j - 1;
            }
            a[j+1] = tempa;
            b[j+1] = tempb;
            c[j+1] = tempc;
        }
    }
    
    inline void insertionSort(std::valarray<double> & a,
                              std::valarray<double> & b,
                              std::valarray<short> & c) {
        for (int i = 1; i < a.size(); ++i) {
            int j = i - 1;
            const double tempa = a[i];
            const double tempb = b[i];
            const short tempc = c[i];
            while (j >= 0 && a[j] > tempa) {
                a[j+1] = a[j];
                b[j+1] = b[j];
                c[j+1] = c[j];
                j = j - 1;
            }
            a[j+1] = tempa;
            b[j+1] = tempb;
            c[j+1] = tempc;
        }
    }
       
    inline int binarySearch(const std::valarray<double> & array, double value) {
   
        // Do the binary search 
        int left = 0;
        int right = array.size() - 1;
        int index;
        while (left <= right) {
            const int middle = static_cast<int>(std::round(0.5 * (left + right)));
            if (left == (right - 1)) {
                index = left;
                return index;
            }
            if (array[middle] <= value) {
                left = middle;
            } else if (array[middle] > value) {
                right = middle;
            }
        }
        index = left;
        return index;
    }

    template<class T>
    inline const T & clamp(const T & x, const T & lower, const T & upper) {
        return std::min(upper, std::max(x, lower));
    }
 
}}